Uproot is a reader and a writer of the ROOT file format using only Python and Numpy. Unlike the standard C++ ROOT implementation, Uproot is only an I/O library, primarily intended to stream data into machine learning libraries in Python. Unlike PyROOT and root_numpy, Uproot does not depend on C++ ROOT. Instead, it uses Numpy to cast blocks of data from the ROOT file as Numpy arrays. Installation Uproot can be installed from PyPI using pip (Awkward Array is optional […]

nnr_probabilities_analysis NNR and global probabilities estimation and analysis in peptides or protein fragmentsThis module calculates global and NNR dependent probabilites in each peptide residue. First, workflow.sh bash script creates a workspace where results folder and dihedral angles .dat file are generated. After that, Python module obtains bidimensional arrays and probabilities about conformation population and structure combination independt and NNR dependent methods. Specifically, independent_arrays.py and conditional_arrays.py generate the 2d arrays where dihedral angles value in each point is contained. Later, this […]