Research

MIKE IO: input/output of MIKE files in python

MIKE IO: input/output of MIKE files in python Read, write and manipulate dfs0, dfs1, dfs2, dfs3, dfsu and mesh files. Facilitates common data processing workflows for MIKE files. For res1d and xns11 files use the related package MIKE IO 1D Requirements Windows or Linux operating system Python x64 3.6, 3.7,3.8 or 3.9 (Windows) VC++ redistributables (already installed if you have MIKE) More info about dependencies Where can I get help? Installation From PyPI: pip install mikeio Or development version (main […]

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Poll

A simple web application to schedule meetings and run polls in python

jawanndenn jawanndenn is a simple web application to schedule meetings and run polls, a libre alternative to Doodle. jawanndenn is libre software developed by Sebastian Pipping. The server code is licensed under the GNU Affero GPL license version 3 or later whereas the client code is licensed under the GNU GPL license version 3 or later. Poll Setup Format The textarea titled “Setup (JSON)” uses a simple JSON-based format that knows the following keys: equal_width — a bool to control […]

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Monitoring

Monitor the stability of a pandas or spark dataframe in python

Population Shift Monitoring popmon is a package that allows one to check the stability of a dataset. popmon works with both pandas and spark datasets. popmon creates histograms of features binned in time-slices, and compares the stability of the profiles and distributions of those histograms using statistical tests, both over time and with respect to a reference. It works with numerical, ordinal, categorical features, and the histograms can be higher-dimensional, e.g. it can also track correlations between any two features. […]

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Authentication

An open solution for strong two-factor authentication like OTP tokens

privacyIDEA privacyIDEA is an open solution for strong two-factor authentication like OTP tokens, SMS, smartphones or SSH keys. Using privacyIDEA you can enhance your existing applications like local login (PAM, Windows Credential Provider), VPN, remote access, SSH connections, access to web sites or web portals with a second factor during authentication. Thus boosting the security of your existing applications. Overview privacyIDEA runs as an additional service in your network and you can connect different applications to privacyIDEA. privacyIDEA does not […]

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Pattern Matching

A library for pattern matching on symbolic expressions in Python

MatchPy MatchPy is a library for pattern matching on symbolic expressions in Python. Work in progress Installation MatchPy is available via PyPI, and for Conda via conda-forge. It can be installed with pip install matchpy or conda install -c conda-forge matchpy. Overview This package implements pattern matching in Python. Pattern matching is a powerful tool for symbolic computations, operating on symbolic expressions. Given a pattern and an expression (which is usually called subject), the goal of pattern matching is to […]

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Fonts

Font Development Toolkit for FontLab 6 & 7 with python

TypeRig TypeRig is a Python library aimed at simplifying the current FontLab API while offering some additional functionality that is heavily biased towards a simultaneous multi-layered workflow. As TypeRig (TR) is under rapid development in the last couple of years, please do update frequently. Important note If you are experiencing any trouble running your scripts after April 2021 please refer to our latest Py2.7 release. It is a snapshot before switching the TR core to Py3+ and refactoring most scripts […]

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3D

A scalable implementation of WobblyStitcher for 3D microscopy images

WobblyStitcher A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scipy scikit-image Visualization ImageJ Getting started Generate four files with fake input $ (cd tool && make) $ ./tool/gen -n 200 200 200 -o 10 10 $ ls -1 *.raw 200x200x200le.00.00.raw 200x200x200le.00.01.raw 200x200x200le.01.00.raw 200x200x200le.01.01.raw stitch $ python3 main.py main.py: processes = 4 47% 390x390x200le.raw Open 390x390x200le.raw in ImageJ. References Kirst, C., Skriabine, S., Vieites-Prado, A., Topilko, T., Bertin,P., Gerschenfeld, G., … & Renier, N. (2020). Mapping the […]

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Data Analysis

An open source Python library for the interactive analysis of multidimensional datasets

HyperSpy HyperSpy is an open source Python library for the interactive analysis of multidimensional datasets that can be described as multidimensional arrays of a given signal (for example, a 2D array of spectra, also known as a spectrum image). HyperSpy makes it straightforward to apply analytical procedures that operate on an individual signal to multidimensional arrays, as well as providing easy access to analytical tools that exploit the multidimensionality of the dataset. Its modular structure makes it easy to add […]

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Django

Django backend of Helium’s planner application

Django backend of Helium’s planner application. Prerequisites Python (>= 3.6) Pip (>= 9.0) MySQL (>= 5.7) Redis (>= 3.2) Getting Started The Platform is developed using Python and Django. Project Setup To setup the Python/Django Platform build environment, execute: make install This project is configured to work with a Virtualenv which has now been setup in the .venv folder. If you’reunfamiliar with how this works, read up on Virtualenv here. The short versionis, virtualenv creates isolated environments for each project’s […]

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Deep Learning

Fast Learning of Temporal Action Proposal via Dense Boundary Generator

ActionDetection-DBG In this repo, we propose a novel and unified action detection framework, named DBG, with superior performance over the state-of-the-art action detectors BSN and BMN. You can use the code to evaluate our DBG for action proposal generation or action detection. For more details, please refer to our paper Fast Learning of Temporal Action Proposal via Dense Boundary Generator! Paper Introduction This paper introduces a novel and unified temporal action proposal generator named Dense Boundary Generator (DBG). In this […]

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