Hi-C spectral decomposition workflow
Spectral decomposition for characterizing long-range interaction profiles in Hi-C maps. Snakemake workflow for the unsupervised method presented in Spracklin, Abdennur et al., 2021. Steps Place supplementary bigwig file information in config/track_metadata.tsv to include in graphical outputs. Must be tab-delimited, including header. Must have columns: Name: a display name ID: a unique identifier to use in the database (can be the same as Name) FileFormat: must be the string bigWig Path: a local path to the file Edit config.yaml. Run: # […]
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