HG002 QC Snakemake
To Run Resources and data specified within snakefile (hg002QC.smk) for simplicity. Tested with snakemake v6.15.3. Warning: Several steps of this workflow require minimum coverage. It’s recommended that this workflow not be run when yield in base pairs is insufficient to produceat least 15X coverage (i.e. yield/3099922541 >= 15x). # clone repo git clone –recursive https://github.com/PacificBiosciences/pb-human-wgs-workflow-snakemake.git workflow # make necessary directories mkdir cluster_logs # create conda environment conda env create –file workflow/environment.yaml # activate conda environment conda activate pb-human-wgs-workflow # submit […]
Read more