A fast Protein Chain / Ligand Extractor and organizer
PDBASER
Are you tired of using visualization software, or full blown suites just to separate protein chains / ligands ? Are you tired of organizing the mess of molecules into separate folders ?
PDBaser does this for you !
PDBaser reads raw .pdb and .ent files as downloaded from the pdb, extracts pure protein chains and heteroatoms (ligands and others) and removes water molecules, and then saves everything in a directory named as the original input filename.
This tool is perfect for RMSD reliability test preparation, where a large number of proteins and their ligands are needed. It can also help people who are not very accustomed to command line interfaces, and aren’t willing to pay a (usually high) premium for other software.
Windows
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