A python tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot
This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What you should prepare is the phased vcf file containg the data of populations you intrested and the outgroup, the outgroup name file, and the annotation file. Enjoy it!!!
It has four models:
0：Using all function, from original vcf data to sfs barplot