A Python package that provides bioinformatics utilities for analyzing omics datasets
PyIOmica (pyiomica)
This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.
A. INSTALLATION
Pre-Installation Requirements
To install PyIOmica on any platform you need Python version 3.7 or higher
Installation Instructions
- To install the current release from PyPI (Python Package Index) use pip:
pip install pyiomica
Alternatively, you can install directly from github using:
pip install git+https://github.com/gmiaslab/pyiomica/
or
git clone https://github.com/gmiaslab/pyiomica/
python setup.py install
B. RUNNING PyIOmica
After installation you can run:
>>> import pyiomica
C. DOCUMENTATION
Documentation for PyIOmica is built-in and is available through the help() functionality